PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498197.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 278aa    MW: 32709.3 Da    PI: 9.8905
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.8e-101438226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    ++++C+f+++ G C++GdrC++ H 
  XP_004498197.1 14 DRVNCPFYFKIGACRHGDRCSRLHN 38
                    6899********************7 PP

2zf-CCCH20.96.5e-07150173226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ Cr + +   C++G+ C+F+H+
  XP_004498197.1 150 REATCRQYEE-NSCNRGGYCNFMHV 173
                     6789**9999.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0651240IPR000571Zinc finger, CCCH-type
SMARTSM003560.00681339IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-71438IPR000571Zinc finger, CCCH-type
PRINTSPR018482.4E-631837IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.4E-633757IPR009145U2 auxiliary factor small subunit
CDDcd125396.83E-5844145No hitNo description
PROSITE profilePS5010210.05344146IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.6E-2244144IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003610.007872142IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018482.4E-637590IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549285.57E-1577149IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018482.4E-63103125IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.4E-63130154IPR009145U2 auxiliary factor small subunit
SMARTSM003560.021148174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.629148175IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5150174IPR000571Zinc finger, CCCH-type
PRINTSPR018482.4E-63165177IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDIITP  60
GVDPNGQPID PRQIQQHFED FYEDIFLELS KFGYIETLNV CDNLADHMIG NVYVLFREED  120
HAAAALASLH GRFYSGRPIL ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKKIGREL  180
RRKLFASQRS RSRSRSRSNS PRRRRSGDRG DRERRDRDRD YESRGRRSSD RDRDRVRDRD  240
SRDREGGGRR RNGSSAREGS EERRARIEQW NREREEKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-7411891184Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188196RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570581.10.0PREDICTED: splicing factor U2af small subunit B
RefseqXP_004498198.10.0PREDICTED: splicing factor U2af small subunit B
RefseqXP_004498197.10.0PREDICTED: splicing factor U2af small subunit B
SwissprotQ9FMY51e-136U2AFB_ARATH; Splicing factor U2af small subunit B
TrEMBLG7IA301e-144G7IA30_MEDTR; Splicing factor U2af small subunit A-like protein
STRINGGSMUA_Achr9P12340_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1251810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.12e-35C3H family protein